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Patrick Kimes

Roche Sequencing
Principal Scientist
San Francisco, CA

Bioinformatics, Statistical Learning, Machine Learning

8:00am PDT

Registration check-in McCaw Hall

9:00am PDT

Machine Learning Algorithmic Deep Dive (Part 1) Campbell Rehearsal Hall

10:15am PDT

Coffee Break Campbell Rehearsal Hall

10:30am PDT

Machine Learning Algorithmic Deep Dive (Part 2) Campbell Rehearsal Hall

12:00pm PDT

Lunch Campbell Rehearsal Hall

1:00pm PDT

An Introduction to Bayesian Inference using R Interfaces to Stan (Part 1) SIEPR 130 Introduction to SparkR (Part 1) Econ 140

2:15pm PDT

Coffee Break Econ 140

2:30pm PDT

An Introduction to Bayesian Inference using R Interfaces to Stan (Part 2) SIEPR 130 Introduction to SparkR (Part 2) Econ 140

4:00pm PDT

Short Break McCaw Hall

4:15pm PDT

What's up with the R consortium? McCaw Hall

4:40pm PDT

Presentation of the Women in R task force McCaw Hall

5:00pm PDT

R-Ladies Presentation 1 McCaw Hall

5:10pm PDT

R-Ladies Presentation 2 McCaw Hall

5:20pm PDT

Discussion McCaw Hall

8:30am PDT

Opening Session McCaw Hall

9:00am PDT

Forty years of S McCaw Hall

10:00am PDT

Coffee Break with Poster Exhibits McCaw Hall

10:30am PDT

R in machine learning competitions McCaw Hall Wrapping Your R tools to Analyze National-Scale Cancer Genomics in the Cloud Lane & Lyons & Lodato

10:48am PDT

Connecting R to the OpenML project for Open Machine Learning McCaw Hall Two-sample testing in high dimensions Lane & Lyons & Lodato

11:06am PDT

R/qtl: Just Barely Sustainable Lane & Lyons & Lodato trackeR: Intrastructure for running and cycling data from GPS-enabled tracking devices in R McCaw Hall

11:24am PDT

Fry: A Fast Interactive Biological Pathway Miner Lane & Lyons & Lodato United Nations World Population Projections with R McCaw Hall

11:42am PDT

Analysis of big biological sequence datasets using the DECIPHER package Lane & Lyons & Lodato jailbreakr: Get out of Excel, free McCaw Hall

12:00pm PDT

Lunch with Poster Exhibits Sponsor Pavilion

1:00pm PDT

Group and sparse group partial least squares approaches applied in a genomics context Barnes & McDowell & Cranston

1:18pm PDT

Fast additive quantile regression in R Barnes & McDowell & Cranston

1:36pm PDT

bigKRLS: Optimizing non-parametric regression in R Barnes & McDowell & Cranston

1:54pm PDT

Multiple Hurdle Tobit models in R: The mhurdle package Barnes & McDowell & Cranston

2:12pm PDT

Detection of Differential Item Functioning with difNLR function Barnes & McDowell & Cranston FiveThirtyEight's data journalism workflow with R McCaw Hall

2:30pm PDT

Coffee Break w/ Poster Session McCaw Hall Applied Biclustering Using the BiclustGUI R Package Sponsor Pavilion Bridging the Data Visualization to Digital Humanities gap: Introducing the Interactive Text Mining Suite Sponsor Pavilion Community detection in multiplex networks : An application to the C. elegans neural network Sponsor Pavilion High-performance R with FastR Sponsor Pavilion IMGTStatClonotype: An R package with integrated web tool for pairwise evaluation and visualization of IMGT clonotype diversity and expression from IMGT/HighV-QUEST output Sponsor Pavilion Prediction of key parameters in the production of biopharmaceuticals using R Sponsor Pavilion Sequence Analysis with Package TraMineR Sponsor Pavilion Using R with Taiwan Government Open Data to create a tool for monitor the city's age-friendliness Sponsor Pavilion Visualization of health and population indicators within urban African populations using R Sponsor Pavilion

3:30pm PDT

Literate Programming McCaw Hall

4:30pm PDT

Short Break McCaw Hall

4:45pm PDT

mlrMBO: A Toolbox for Model-Based Optimization of Expensive Black-Box Functions SIEPR 130 R at Microsoft McCaw Hall

5:03pm PDT

'AF' a new package for estimating the attributable fraction McCaw Hall Deep Learning for R with MXNet SIEPR 130

5:21pm PDT

Interactive Naive Bayes using Shiny: Text Retrieval, Classification, Quantification SIEPR 130 The challenge of combining 176 x #otherpeoplesdata to create the Biomass And Allometry Database (BAAD) Econ 140

5:39pm PDT

Rho: High Performance R McCaw Hall xgboost: An R package for Fast and Accurate Gradient Boosting SIEPR 130

5:57pm PDT

Colour schemes in data visualisation: Bias and Precision McCaw Hall Rectools: An Advanced Recommender System SIEPR 130

6:30pm PDT

Welcome Reception Bing Concert Hall

9:00am PDT

Towards a grammar of interactive graphics McCaw Hall

10:00am PDT

Coffee Break with Poster Exhibits McCaw Hall

10:30am PDT

Notebooks with R Markdown McCaw Hall Profvis: Profiling tools for faster R code Econ 140

10:48am PDT

Size of Datasets for Analytics and Implications for R Econ 140

11:06am PDT

Resource-Aware Scheduling Strategies for Parallel Machine Learning R Programs though RAMBO Econ 140

11:24am PDT

Heatmaps in R: Overview and best practices Barnes & McDowell & Cranston

11:42am PDT

Classifying Murderers in Imbalanced Data Using randomForest McCaw Hall Phylogenetically informed analysis of microbiome data using adaptive gPCA in R Barnes & McDowell & Cranston

1:00pm PDT

R markdown: Lifesaver or death trap? McCaw Hall R at Google Lane & Lyons & Lodato

1:18pm PDT

Tools for Robust R Packages SIEPR 130

1:20pm PDT

How Teradata Aster R Scales Data Science Lane & Lyons & Lodato

1:30pm PDT

Statistical Computing with R Lane & Lyons & Lodato

1:36pm PDT

Adding R, Jupyter and Spark to the toolset for understanding the complex computing systems at CERN's Large Hadron Collider McCaw Hall GNU make for reproducible data analysis using R and other statistical software Barnes & McDowell & Cranston

1:40pm PDT

Changing lives with Data Science at Microsoft Lane & Lyons & Lodato

1:54pm PDT

Checkmate: Fast and Versatile Argument Checks SIEPR 130 The simulator: An Engine for Streamlining Simulations Barnes & McDowell & Cranston

1:55pm PDT

Bringing the Power of R to Citizen Data Scientists Lane & Lyons & Lodato

2:05pm PDT

Making the R community more open Lane & Lyons & Lodato

2:12pm PDT

High performance climate downscaling in R SIEPR 120

2:30pm PDT

Coffee Break with Poster Session McCaw Hall

3:30pm PDT

Flexible and Interpretable Regression Using Convex Penalties McCaw Hall

9:00am PDT

Statistical Thinking in a Data Science Course McCaw Hall

10:00am PDT

Coffee Break w/ Poster Exhibits McCaw Hall

10:30am PDT

Data Landscapes: a pragmatic and philosophical visualisation of the sustainable urban landscape SIEPR 130

10:48am PDT

Practical tools for exploratory web graphics SIEPR 130

11:05am PDT

Using R at a rapidly scaling healthcare technology startup Econ 140

11:06am PDT

viztrackr: Tracking and discovering plots via automatic semantic annotations SIEPR 130

11:24am PDT

ggduo: Pairs plot for two group data SIEPR 130

11:42am PDT

rbokeh: A Simple, Flexible, Declarative Framework for Interactive Graphics SIEPR 130

12:00pm PDT

Lunch w/ Poster Exhibits McCaw Hall

1:00pm PDT

Estimating causal dose response functions using the causaldrf R package McCaw Hall Catching up with Rstudio Lane & Lyons & Lodato

1:15pm PDT

Getting R into your bathroom McCaw Hall

1:20pm PDT

R for Big Data and Applications: Using R at Oracle Lane & Lyons & Lodato

1:25pm PDT

Two Cultures: From Stata to R McCaw Hall

1:30pm PDT

The Best Time to Post on Reddit McCaw Hall

1:35pm PDT

Interact with Python from within R McCaw Hall Scalable Machine Learning in R with H2O Lane & Lyons & Lodato

1:40pm PDT

Let's meet on satRday! McCaw Hall

1:45pm PDT

Optimizing Food Inspections with Analytics McCaw Hall

2:00pm PDT

RCloud - Collaborative Environment for Visualization and Big Data Analytics McCaw Hall

3:00pm PDT

Closing Remarks McCaw Hall